mito_section.h

/* Copyright (c) 2013-2023, EPFL/Blue Brain Project
 *
 * SPDX-License-Identifier: Apache-2.0
 */
#pragma once
 
#include <cstdint>  // uint32_t
#include <memory>   // std::shared_ptr
 
#include <morphio/mitochondria.h>
#include <morphio/properties.h>
#include <morphio/section_base.h>
#include <morphio/types.h>
 
namespace morphio {
using mito_upstream_iterator = upstream_iterator_t<MitoSection>;
using mito_breadth_iterator = morphio::breadth_iterator_t<MitoSection, Mitochondria>;
using mito_depth_iterator = morphio::depth_iterator_t<MitoSection, Mitochondria>;
 
class MitoSection: public SectionBase<MitoSection>
{
    using SectionId = Property::MitoSection;
    using PointAttribute = Property::MitoDiameter;
 
  public:
    mito_depth_iterator depth_begin() const;
    mito_depth_iterator depth_end() const;
 
    mito_breadth_iterator breadth_begin() const;
    mito_breadth_iterator breadth_end() const;
 
    mito_upstream_iterator upstream_begin() const;
    mito_upstream_iterator upstream_end() const;
 
    range<const uint32_t> neuriteSectionIds() const;
 
    range<const floatType> diameters() const;
 
    range<const floatType> relativePathLengths() const;
 
    bool hasSameShape(const MitoSection& other) const noexcept;
 
  protected:
    MitoSection(uint32_t id, const std::shared_ptr<Property::Properties>& morphology)
        : SectionBase(id, morphology) {}
    friend MitoSection Mitochondria::section(uint32_t) const;
    friend class SectionBase<MitoSection>;
    friend class mut::MitoSection;
};
}  // namespace morphio