Index

A

Annotation (class in morphio) annotations (morphio.Morphology property) (morphio.mut.Morphology property) AnnotationType (class in morphio) append_root_section() (morphio.mut.DendriticSpine method) (morphio.mut.Mitochondria method) (morphio.mut.Morphology method)

append_section() (morphio.mut.MitoSection method) (morphio.mut.Section method) argsort() (morphio.Collection method) as_immutable() (morphio.mut.Morphology method) as_mutable() (morphio.Morphology method)

B

breadth_begin() (morphio.mut.Mitochondria method)

build_read_only() (morphio.mut.Morphology method)

C

cell_family (morphio.CellLevel property) (morphio.DendriticSpine property) (morphio.Morphology property) (morphio.mut.DendriticSpine property) (morphio.mut.Morphology property) cell_level (morphio.Properties property) CellFamily (class in morphio) CellLevel (class in morphio) center (morphio.mut.Soma property) (morphio.Soma property)

children (morphio.MitoSection property) (morphio.mut.Section property) (morphio.Section property) (morphio.SectionLevel property) children() (morphio.mut.Mitochondria method) close() (morphio.Collection method) Collection (class in morphio) connectivity (morphio.DendriticSpine property) (morphio.Morphology property) (morphio.mut.Morphology property)

D

delete_section() (morphio.mut.Morphology method) DendriticSpine (class in morphio) (class in morphio.mut) depth_begin() (morphio.mut.Mitochondria method) details (morphio.Annotation property) diameters (morphio.Annotation property) (morphio.DendriticSpine property) (morphio.MitoSection property) (morphio.Morphology property) (morphio.mut.MitoSection property) (morphio.mut.Section property) (morphio.mut.Soma property) (morphio.PointLevel property) (morphio.Section property) (morphio.Soma property)

E

endoplasmic_reticulum (morphio.Morphology property) (morphio.mut.Morphology property)

EndoplasmicReticulum (class in morphio) (class in morphio.mut)

F

filament_counts (morphio.EndoplasmicReticulum property) (morphio.mut.EndoplasmicReticulum property)

G

get_all() (morphio.WarningHandlerCollector method)

GlialCell (class in morphio) (class in morphio.mut)

H

has_same_shape() (morphio.MitoSection method) (morphio.mut.MitoSection method) (morphio.mut.Section method) (morphio.Section method)

I

id (morphio.MitoSection property) (morphio.mut.MitoSection property) (morphio.mut.Section property) (morphio.Section property) IDSequenceError is_heterogeneous() (morphio.mut.Section method) (morphio.Section method) is_root (morphio.MitoSection property) (morphio.mut.Section property) (morphio.Section property)

is_root() (morphio.mut.Mitochondria method) iter() (morphio.DendriticSpine method) (morphio.MitoSection method) (morphio.Morphology method) (morphio.mut.Morphology method) (morphio.mut.Section method) (morphio.Section method) IterType (class in morphio)

L

line_number (morphio.Annotation property) load() (morphio.Collection method)

load_unordered() (morphio.Collection method) LogLevel (class in morphio)

M

markers (morphio.Morphology property) (morphio.mut.Morphology property) max_distance (morphio.mut.Soma property) (morphio.Soma property) MissingParentError Mitochondria (class in morphio) (class in morphio.mut) mitochondria (morphio.Morphology property) (morphio.mut.Morphology property) MitochondriaPointLevel (class in morphio) MitoSection (class in morphio) (class in morphio.mut)

module morphio morphio.mut morphio module morphio.mut module MorphioError Morphology (class in morphio) (class in morphio.mut) MultipleTrees

N

n_points (morphio.Morphology property) (morphio.Section property)

neurite_section_ids (morphio.MitoSection property) (morphio.mut.MitoSection property)

O

Option (class in morphio)

P

parent (morphio.MitoSection property) (morphio.mut.Section property) (morphio.Section property) parent() (morphio.mut.Mitochondria method) perimeters (morphio.Annotation property) (morphio.Morphology property) (morphio.mut.Section property) (morphio.PointLevel property) (morphio.Section property) point_level (morphio.Properties property)

PointLevel (class in morphio) points (morphio.Annotation property) (morphio.DendriticSpine property) (morphio.Morphology property) (morphio.mut.Section property) (morphio.mut.Soma property) (morphio.PointLevel property) (morphio.Section property) (morphio.Soma property) post_synaptic_density (morphio.mut.DendriticSpine property) Properties (class in morphio)

R

RawDataError relative_path_lengths (morphio.MitoSection property) (morphio.mut.MitoSection property) remove_unifurcations() (morphio.mut.Morphology method) reset() (morphio.WarningHandlerCollector method)

root_sections (morphio.DendriticSpine property) (morphio.Mitochondria property) (morphio.Morphology property) (morphio.mut.DendriticSpine property) (morphio.mut.Mitochondria property) (morphio.mut.Morphology property)

S

Section (class in morphio) (class in morphio.mut) section() (morphio.DendriticSpine method) (morphio.Mitochondria method) (morphio.Morphology method) (morphio.mut.Mitochondria method) (morphio.mut.Morphology method) section_id (morphio.Annotation property) section_indices (morphio.EndoplasmicReticulum property) (morphio.mut.EndoplasmicReticulum property) section_level (morphio.Properties property) section_offsets (morphio.DendriticSpine property) (morphio.Morphology property) section_types (morphio.DendriticSpine property) (morphio.Morphology property) (morphio.SectionLevel property) SectionBuilderError SectionLevel (class in morphio) sections (morphio.DendriticSpine property) (morphio.Mitochondria property) (morphio.Morphology property) (morphio.mut.DendriticSpine property) (morphio.mut.Mitochondria property) (morphio.mut.Morphology property) (morphio.SectionLevel property)

SectionType (class in morphio) set_ignored_warning() (in module morphio) set_maximum_warnings() (in module morphio) set_raise_warnings() (in module morphio) Soma (class in morphio) (class in morphio.mut) soma (morphio.Morphology property) (morphio.mut.Morphology property) soma_type (morphio.CellLevel property) (morphio.Morphology property) (morphio.mut.Morphology property) SomaError SomaType (class in morphio) surface (morphio.mut.Soma property) (morphio.Soma property) surface_areas (morphio.EndoplasmicReticulum property) (morphio.mut.EndoplasmicReticulum property)

T

type (morphio.Annotation property) (morphio.mut.Section property) (morphio.mut.Soma property) (morphio.Section property) (morphio.Soma property)

U

UnknownFileType

upstream_begin() (morphio.mut.Mitochondria method)

V

VasculatureSectionType (class in morphio) version (morphio.CellLevel property) (morphio.DendriticSpine property) (morphio.Morphology property) (morphio.mut.Morphology property)

volumes (morphio.EndoplasmicReticulum property) (morphio.mut.EndoplasmicReticulum property)

W

Warning (class in morphio) WarningHandlerCollector (class in morphio) write() (morphio.DendriticSpine method) (morphio.mut.DendriticSpine method) (morphio.mut.Morphology method)

WriterError