#include <dendritic_spine.h>
Inheritance diagram for morphio::mut::DendriticSpine:
Public Member Functions | |
| DendriticSpine (const std::string &source) | |
| std::vector< Property::DendriticSpine::PostSynapticDensity > & | postSynapticDensity () noexcept |
| Returns the post synaptic density values. | |
| const std::vector< Property::DendriticSpine::PostSynapticDensity > & | postSynapticDensity () const noexcept |
| Returns the post synaptic density values. | |
 Public Member Functions inherited from morphio::mut::Morphology | |
| Morphology (std::shared_ptr< WarningHandler > warning_handler=nullptr) | |
| Morphology (const std::string &uri, unsigned int options=NO_MODIFIER, std::shared_ptr< WarningHandler > warning_handler=nullptr) | |
| Morphology (const HighFive::Group &group, unsigned int options=NO_MODIFIER, std::shared_ptr< WarningHandler > warning_handler=nullptr) | |
| Build a mutable Morphology from an HighFive::Group. | |
| Morphology (const mut::Morphology &morphology, unsigned int options=NO_MODIFIER, std::shared_ptr< WarningHandler > warning_handler=nullptr) | |
| Build a mutable Morphology from a mutable morphology. | |
| Morphology (const morphio::Morphology &morphology, unsigned int options=NO_MODIFIER, std::shared_ptr< WarningHandler > warning_handler=nullptr) | |
| Build a mutable Morphology from a read-only morphology. | |
| const std::vector< std::shared_ptr< Section > > & | rootSections () const noexcept |
| Returns all section ids at the tree root. | |
| const std::map< uint32_t, std::shared_ptr< Section > > & | sections () const noexcept |
| Returns the dictionary id -> Section for this tree. | |
| std::shared_ptr< Soma > & | soma () noexcept |
| const std::shared_ptr< Soma > & | soma () const noexcept |
| Mitochondria & | mitochondria () noexcept |
| Return the mitochondria container class. | |
| const Mitochondria & | mitochondria () const noexcept |
| Return the mitochondria container class. | |
| EndoplasmicReticulum & | endoplasmicReticulum () noexcept |
| Return the endoplasmic reticulum container class. | |
| const EndoplasmicReticulum & | endoplasmicReticulum () const noexcept |
| Return the endoplasmic reticulum container class. | |
| const std::vector< Property::Annotation > & | annotations () const noexcept |
| Return the annotation objects. | |
| const std::vector< Property::Marker > & | markers () const noexcept |
| Return the markers from the ASC file. | |
| const std::shared_ptr< Section > & | section (uint32_t id) const |
| depth_iterator | depth_begin () const |
| depth_iterator | depth_end () const |
| breadth_iterator | breadth_begin () const |
| breadth_iterator | breadth_end () const |
| void | deleteSection (std::shared_ptr< Section > section, bool recursive=true) |
| std::shared_ptr< Section > | appendRootSection (const morphio::Section &, bool recursive=false) |
| std::shared_ptr< Section > | appendRootSection (const std::shared_ptr< Section > §ion, bool recursive=false) |
| std::shared_ptr< Section > | appendRootSection (const Property::PointLevel &, SectionType sectionType) |
| Append a root Section. | |
| void | applyModifiers (unsigned int modifierFlags) |
| SomaType | somaType () const noexcept |
| Return the soma type. | |
| CellFamily | cellFamily () const noexcept |
| Return the cell family (neuron or glia) | |
| MorphologyVersion | version () const noexcept |
| Return the version. | |
| void | write (const std::string &filename) const |
| Write file to H5, SWC, ASC format depending on filename extension. | |
| void | addAnnotation (const Property::Annotation &annotation) |
| void | addMarker (const Property::Marker &marker) |
| Property::Properties | buildReadOnly () const |
| Return the data structure used to create read-only morphologies. | |
| std::unordered_map< int, std::vector< unsigned int > > | connectivity () |
| void | removeUnifurcations () |
| std::shared_ptr< WarningHandler > | getWarningHandler () const |
Additional Inherited Members | |
| Public Attributes inherited from morphio::mut::Morphology | |
| std::shared_ptr< Soma > | _soma |
| std::shared_ptr< Property::CellLevel > | _cellProperties |
| EndoplasmicReticulum | _endoplasmicReticulum |
| Property::DendriticSpine::Level | _dendriticSpineLevel |
Detailed Description
Mutable(editable) morphio::DendriticSpine