#include <mitochondria.h>

Public Member Functions
const std::vector< MitoSectionP > &	children (const MitoSectionP &) const
	Get the Section children.

const MitoSectionP &	section (uint32_t id) const

const std::map< uint32_t, MitoSectionP > &	sections () const noexcept
	Returns the dictionary id -> Section for this tree.

mito_depth_iterator	depth_begin () const

mito_depth_iterator	depth_begin (const MitoSectionP &section) const

mito_depth_iterator	depth_end () const

mito_breadth_iterator	breadth_begin () const

mito_breadth_iterator	breadth_begin (const MitoSectionP &section) const

mito_breadth_iterator	breadth_end () const

mito_upstream_iterator	upstream_begin () const

mito_upstream_iterator	upstream_begin (const MitoSectionP &section) const

mito_upstream_iterator	upstream_end () const

const MitoSectionP &	parent (const MitoSectionP &parent) const

bool	isRoot (const MitoSectionP &section) const

const std::vector< MitoSectionP > &	rootSections () const noexcept

MitoSectionP	appendRootSection (const Property::MitochondriaPointLevel &pointProperties)

MitoSectionP	appendRootSection (const morphio::MitoSection &, bool recursive=false)

MitoSectionP	appendRootSection (const MitoSectionP &, bool recursive=false)

const MitoSectionP &	mitoSection (uint32_t id) const

void	_buildMitochondria (Property::Properties &properties) const

Friends
class	MitoSection

Detailed Description

Mutable(editable) morphio::Mitochondria

Member Function Documentation

◆ _buildMitochondria()

void morphio::mut::Mitochondria::_buildMitochondria ( Property::Properties & properties ) const

Fill the 'properties' variable with the mitochondria data

◆ appendRootSection() [1/2]

MitoSectionP morphio::mut::Mitochondria::appendRootSection	(	const morphio::MitoSection &	,
		bool	recursive = `false`
	)

Append a root MitoSection

If recursive == true, all descendent mito sections will be appended as well

◆ appendRootSection() [2/2]

MitoSectionP morphio::mut::Mitochondria::appendRootSection ( const Property::MitochondriaPointLevel & pointProperties )

Append a new root MitoSection

◆ breadth_begin()

mito_breadth_iterator morphio::mut::Mitochondria::breadth_begin ( ) const

Breadth first iterator

If id == -1, the iteration will be successively performed starting at each root section

◆ depth_begin()

mito_depth_iterator morphio::mut::Mitochondria::depth_begin ( ) const

Depth first iterator starting at a given section id

If id == -1, the iteration will start at each root section, successively

◆ isRoot()

bool morphio::mut::Mitochondria::isRoot ( const MitoSectionP & section ) const

Return true if section is a root section

◆ parent()

const MitoSectionP& morphio::mut::Mitochondria::parent ( const MitoSectionP & parent ) const

Return the parent mithochondrial section ID

◆ rootSections()

const std::vector< Mitochondria::MitoSectionP > & morphio::mut::Mitochondria::rootSections ( ) const

inlinenoexcept

Return the list of IDs of all mitochondrial root sections (sections whose parent ID are -1)

◆ section()

const MitoSectionP& morphio::mut::Mitochondria::section ( uint32_t id ) const

Get the shared pointer for the given section

Note: multiple morphologies can share the same Section instances.

◆ upstream_begin()

mito_upstream_iterator morphio::mut::Mitochondria::upstream_begin ( ) const

Upstream first iterator